Differentiation of Oil Palm Hybrid from Parentals Using As-PCR Marker

doi.org/10.26538/tjnpr/v1i6.7

Authors

  • Vona D. Odenore Nigerian Institute for Oil Palm Research, Benin City, Nigeria.
  • Geoffrey O. Anoliefo Environmental Biotechnology and Sustainability Research Group, Dept. of Plant Biol. and Biotechnology, University of Benin, Benin City.
  • Omorefe Asemota Nigerian Institute for Oil Palm Research, Benin City, Nigeria.
  • Beckley Ikhajiagbe Environmental Biotechnology and Sustainability Research Group, Dept. of Plant Biol. and Biotechnology, University of Benin, Benin City.
  • Leonard O. Ihase Nigerian Institute for Oil Palm Research, Benin City, Nigeria.
  • Chukwuemeka R. Eke Nigerian Institute for Oil Palm Research, Benin City, Nigeria.

Keywords:

Oil palm,, Tenera,, Dura,, Pisifera,, Allele Specific-PCR.

Abstract

Oil palm (Elaesis guineensis) is a highly economic oil producing tree that produces fruits of three
forms which cannot be differentiated until reproductively matured. The commercially acceptable
form is the Tenera fruit form because of its high oil-yielding capacity. It is a hybrid of Dura and
Pisifera. The aim of this study was to determine alleles unique to Tenera fruit form of the Nigerian
oil palm. Allele Specific Polymerase Chain Reaction (AS-PCR) method was used in this study.
It required DNA isolation, common shell gene primer testing, allele specific primer pair investigation as right and left primers and a multiplex PCR investigation consisting of common and allele specific primers for the shell gene. These primer combinations were used to screen the genome of Dura, Pisifera and Tenera for variants in the shell gene. The findings from this study suggest two alleles of sizes 400 bp and 200 bp unique to Tenera when the primer combinations S3F&R and S22&S32 was used. This can serve as a marker for differentiating Tenera from Dura and Pisifera. The outcome of this research will aid early detection of choice variety for distribution
to Oil palm growers.

References

Singh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, Nookiah R, Amiruddin MD, Rosli R, Manaf MA, Chan KL, Halim MA, Azizi N, Lakey N, Smith SW, Budiman MA, Hogan M, Bacher B, Van A, Brunt C, Wang C, Ordway JM, Sambanthamurthi R, Martienssen, RA. The oil palm

SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature 2013; 500:340-344.

Babu BK, Mathur RK, KumarP N, Ramajayam D, Ravichandran G, Venu MVB, Babu SS. Development, identification and validation of CAPS marker for SHELL trait which governs dura, Pisifera and Tenera fruit forms in oil palm (Elaeis guineensis Jacq.). PLoS ONE. 2017; 12(2):1-16.

Hartley CW S. The Oil palm (Elaeis guineensis jacq.), 3rd edition, New York. Longman; 2000. 806 p.

Reyes PA, Ochoa JC, Montoya C, Daza E, Ayala IM, Romero HM. Development and validation of a bi-directional allelespecific PCR tool for differentiation in nurseries of dura, Tenera and Pisifera oil palms. Agro Colomb 2015; 33(1):5-10.

Konieczny A, Ausubel FM. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 1993; 4:403-410.

Cha RS, Zarbl H, Keohavong P, Thilly WG. Mismatch Amplification Mutation Assay (MAMA): Application to the cH-ras gene. PCR Meth Appl. 1992; 2:14-20.

Kwok S, Chang SY, Sninsky JJ, Wang A. A guide to the design and use of mismatched and degenerate primers. PCR Meth Appl. 1994; 3:539-547.

Liu JS, Huang M, Sun S, Liu Y, Liu W, Wang X, Zhang H, Wang, W Hua. An improved allele-specific PCR primer design method for SNP marker analysis and its application. Plant Methods. 2012; 8:34.

Kundan MK, Fougat RS, Ballani A, Vinita T, Yachana J, Madhumati B. Potential and application of molecular markers techniques for plant genome analysis. Int J Pure Appl Biosci. 2014; 2(1):169-188.

Jin FM, Yang YX, Xue J, Jia YH, Liu Z Q. Assaying single nucleotide polymorphism of high pigment genes Hp1 and Hp2 based on allele specific PCR in tomato. J Agric Biotechnol. 2009; 17:851-857.

Clermont O, Christenson JK, Daubie AS, Gordon DM Denamur E. Development of an allele specific PCR for Escherichia coliB2 sub-typing, a rapid and easy to perform substitute of multilocus sequence typing. J Microbio Meth.2014;101:24-27.

Sambrook J, Rusell DW. Molecular Cloning: A laboratory Manual. Cold Spring Harbor, New York, 2001. 978 p.

Downloads

Published

2017-12-01

How to Cite

D. Odenore, V., O. Anoliefo, G., Asemota, O., Ikhajiagbe, B., O. Ihase, L., & R. Eke, C. (2017). Differentiation of Oil Palm Hybrid from Parentals Using As-PCR Marker: doi.org/10.26538/tjnpr/v1i6.7 . Tropical Journal of Natural Product Research (TJNPR), 1(6), 259–261. Retrieved from https://tjnpr.org/index.php/home/article/view/370