A Computational Insights of Ocimum basilicum Flavonoid and Essential Oils Interaction in the Targeting Keap1/SIRT1/NFKB Signaling Pathway
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Abstract
Type 2 diabetes mellitus (T2DM) is a metabolic disorder that has a negative relationship with male reproduction. The imbalance between endogenous antioxidants and inflammatory mediators would initiate inflammation development, further accelerating tissue aging. This study aimed to investigate the flavonoids and essential oils from Ocimum basilicum involved in
Keap1/SIRT1/NFκB. O. basilicum compounds used were flavonoid (apigenin, rutin, and quercetin) and essential oils (α-bergamotene, α-cadinol, methyl cinnamate, and methyl eugenol), which were then evaluated for toxicity by Protox II and pharmacokinetic properties by ADMET.
The protein network was built by STRING. The molecular docking was performed by PyRx on NFκB, SIRT1, and Nrf2. The result demonstrated that apigenin, rutin, α-bergamotene, α-cadinol, and methyl cinnamate have low toxicity. The pharmacokinetics study showed that O. basilicumwas primarily absorbed in the human intestine. The protein network analysis revealed that NFκB and Nrf2 were involved in inflammatory response, regulation of stress response, and insulin
resistance pathways. SIRT1 and Nrf2 have pivotal roles in insulin resistance-induced gonadal disease. Rutin has the strongest binding affinity for Keap1 (4IQK), whereas α-bergamotene and α-cadinol have the strongest binding affinity for NFκB (3DO7) and SIRT1 (4I5I), respectively.
The flavonoid contents might be beneficial to activate Nrf2, whereas the essential oils of O.
basilicum inhibit NFκB and activate SIRT1. These preliminary findings suggested that O.
basilicum bioactive compounds might provide a promising candidate for restoring the imbalance in T2DM through the Keap1/SIRT1/NFκB signaling pathways.
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Saeedi P, Petersohn I, Salpea P, Malanda B, Karuranga S, Unwin N, Colagiuri S, Guariguata L, Motala AA, Ogurtsova K, Shaw JE, Bright D, Williams R. Global and regional diabetes prevalence estimates for 2019 and projections for
and 2045: Results from the International Diabetes Federation Diabetes Atlas, 9th edition. Diabetes Res Clin Pract. 2019; 157:107843.
Dali-Youcef N, Mecili M, Ricci R, Andrès E. Metabolic inflammation: Connecting obesity and insulin resistance. Ann Med. 2013;45(3):242–53.
Zatterale F, Longo M, Naderi J, Raciti GA, Desiderio A, Miele C, Beguinot F. Chronic Adipose Tissue Inflammation Linking Obesity to Insulin Resistance and Type 2 Diabetes. Front Physiol. 2020; 10(1):1607.
Jiang Q, Linn T, Drlica K, Shi L. Diabetes as a potential compounding factor in COVID-19-mediated male subfertility. Cell Biosci. 2022;12(1):35.
De Oliveira SA, Cerri PS, Sasso-Cerri E. Impaired macrophages and failure of steroidogenesis and spermatogenesis in rat testes with cytokines deficiency
induced by diacerein. Histochem Cell Biol. 2021; 156: 561-581.
Nna VU, Abu Bakar AB, Ahmad A, Eleazu CO, Mohamed M. Oxidative Stress, NF-κB-Mediated Inflammation and Apoptosis in the Testes of Streptozotocin–Induced Diabetic Rats: Combined Protective Effects of Malaysian Propolis and Metformin. Antioxidants. 2019; 8(10):465.
Gao W, Guo L, Yang Y, Wang Y, Xia S, Gong H, Zhang BK, Yan M. Dissecting the Crosstalk Between Nrf2 and NF-κB Response Pathways in Drug-Induced Toxicity. Front Cell Dev Biol. 2022; 9:809952.
Chung JY, Chen H, Zirkin B. Sirt1 and Nrf2: regulation of Leydig cell oxidant/antioxidant intracellular environment and steroid formation†. Biol Reprod. 2021; 105(5):1307–16.
Hanukoglu I. Antioxidant Protective Mechanisms against Reactive Oxygen Species (ROS) Generated by Mitochondrial P450 Systems in Steroidogenic Cells. Drug Metab Rev. 2006; 38(1–2):171–96.
Fraczek M, Lewandowska A, Budzinska M, Kamieniczna M, Wojnar L, Gill K, Piasecka M, Kups M, Havrylyuk A, Chopyak V, Nakonechnyy J, Nakonechnyy A, Kurpisz M. The Role of Seminal Oxidative Stress Scavenging System in
the Pathogenesis of Sperm DNA Damage in Men Exposed and Not Exposed to Genital Heat Stress. Int J Environ Res Public Health. 2022; 19(5):2713.
Chen H, Jin S, Guo J, Kombairaju P, Biswal S, Zirkin BR. Knockout of the transcription factor Nrf2: Effects on testosterone production by aging mouse Leydig cells. Mol Cell Endocrinol. 2015; 409(11):113–20.
Khawar M, Sohail A, Li W. SIRT1: A Key Player in Male Reproduction. Life. 2022; 12(2):318.
Chang C, Su H, Zhang D, Wang Y, Shen Q, Liu B, Huang R, Zhou T, Peng C, Wong CCL, Shen HM, Lippincott-Schwartz J, Liu W. AMPK-Dependent Phosphorylation of GAPDH Triggers Sirt1 Activation and Is Necessary for Autophagy upon Glucose Starvation. Mol Cell. 2015; 60(6):930–40.
Adelusi TI, Du L, Hao M, Zhou X, Xuan Q, Apu C, Sun Y, Lu Q, Yin X. Keap1/Nrf2/ARE signaling unfolds therapeutic targets for redox imbalanced-mediated diseases and diabetic nephropathy. Biomed Pharmacother. 2020;123(3):109732.
Zhou L, Xu D yu, Sha W gang, Shen L, Lu G yuan, Yin X, Wang M jun. High glucose induces renal tubular epithelial injury via Sirt1/NF-kappaB/microR-29/Keap1 signal pathway. J Transl Med. 2015; 13(1):352.
Abedimanesh N, Nouri M, Mohammadnejad K, Barati M, Dabardani E, Kakavand E, Eskandari MR, Hosseini SH, Mohammadi SM, Jafari Anarkooli I, Noubarani M, Andalib S, Yazdinezhad A, Motlagh* B. Vinca herbacea Extract Suppresses NF-kB Signaling and Modulates SIRT1/AMPK/PGC1α Axis to Exert Antidiabetic Effects in Streptozotocin- Induced Diabetic Rats. Res J Pharmacogn.
; 9(1):1-15.
Nugroho C, Mirnia E, Cumagun CJR. Antifungal Activities of Sweet Basil (Ocimum basilicum L.) Aqueous Extract Against Sclerotium rolfsii, Causal Agent of Damping-Off on Tomato Seedling. AGRIVITA J Agric Sci. 2019; 41(1):149–57.
Aye A, Jeon YD, Lee JH, Bang KS, Jin JS. Antiinflammatory activity of ethanol extract of leaf and leaf callus of basil (Ocimum basilicum L.) on RAW 264.7 macrophage cells. Orient Pharm Exp Med. 2019; 19(2):217–26.
Singh P, Chakraborty P, He DH, Mergia A. Extract prepared from the leaves of Ocimum basilicum inhibits the entry of Zika virus. Acta Virol. 2019; 63(03):316–21.
Li H, Ge Y, Luo Z, Zhou Y, Zhang X, Zhang J, Fu Q. Evaluation of the chemical composition, antioxidant and anti-inflammatory activities of distillate and residue fractions of sweet basil essential oil. J Food Sci Technol. 2017;
(7):1882–90.
Torres RG, Casanova L, Carvalho J, Marcondes MC, Costa
SS, Sola-Penna M, Zancan P. Ocimum basilicum but not Ocimum gratissimum present cytotoxic effects on human breast cancer cell line MCF-7, inducing apoptosis and
triggering mTOR/Akt/p70S6K pathway. J Bioenerg Biomembr. 2018; 50(2):93–105.
Abd El Azim MH. Phenolic Compounds and Cytotoxic Activities of Methanol Extract of Basil (Ocimum basilicumL.). J Microb Biochem Technol. 2015; 07(04):182-185.
Brandão LB, Santos LL, Martins RL, Rodrigues ABL, Pena Da Costa AL, Faustino CG, Da Silva De Almeida SSM. The Potential Effects of Species Ocimum basilicum L. on Health:A Review of the Chemical and Biological Studies. Pharmacogn Rev. 2022; 16(31):22–6.
Shahrajabian MH, Sun W, Cheng Q. Chemical components and pharmacological benefits of Basil (Ocimum basilicum): a review. Int J Food Prop. 2020; 23(1):1961–70.
Prasetyawan S, Safitri A, Atho’illah MF, Rahayu S. Computational evaluation of bioactive compounds in Curcuma zanthorrhiza targeting SIRT1 and NFκB.
BioTechnologia. 2023; 104(2):171–82.
Agu PC, Afiukwa CA, Orji OU, Ezeh EM, Ofoke IH, Ogbu CO, Ugwuja EI, Aja PM. Molecular docking as a tool for the discovery of molecular targets of nutraceuticals in diseases management. Sci Rep. 2023; 13(1):13398.
Pertami SB, Arifah SN, Atho’illah MF, Budiono B. Active Compounds from Polyscias scutellaria Stimulate Breast Milk Production: In Silico Study on Serotonergic 5-HT2A Receptors and Prolactin Receptors. Trop J Nat Prod Res.
; 5(7):1223–9.
Banerjee P, Eckert AO, Schrey AK, Preissner R. ProTox-II: a webserver for the prediction of toxicity of chemicals. Nucleic Acids Res. 2018; 46(Web Server issue):W257–63.
Drwal MN, Banerjee P, Dunkel M, Wettig MR, Preissner R. ProTox: a web server for the in silico prediction of rodent oral toxicity. Nucleic Acids Res. 2014; 42(Web Server issue):W53–8.
Makiyah SNN, Usman S, Dwijayanti DR. In Silico Toxicity Prediction of Bioactive Compounds of Dioscorea alata L.Trop J Nat Prod Res. 2022; 6(10):1587–96.
Sa’adah NAM, Aulia B, Ramadhani DN, Cahyani MD, Zulkifli MM, Arifah SN, Atho’illah MF, Lestari SR, Gofur A. In silico study of potential organosulfur and flavonoids compounds in garlic (Allium sativum L.) as inhibitor of α-
glucosidase enzyme. AIP Conference Proceedings; 2023; p. 020078.
Pires DEV, Blundell TL, Ascher DB. pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures. J Med Chem. 2015; 58(9):4066–72.
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C. STRING v10: protein-protein interaction networks, integrated over the
tree of life. Nucleic Acids Res. 2015; 43(Database issue):D447-452.
Dallakyan S, Olson AJ. Small-molecule library screening by docking with PyRx. Methods Mol Biol Clifton NJ. 2015;1263:243–50.
Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading. J Comput Chem. 2010; 31(2):455–61.
Gilmore TD, Siggers T. NF-kappaB and the Immune System. In: Bradshaw RA, Hart GW, Stahl PD, editors. Encyclopedia of Cell Biology (Second Edition). Oxford: Academic Press; 2023. p. 417–26.
McBurney MW, Clark-Knowles KV, Caron AZ, Gray DA. SIRT1 is a Highly Networked Protein That Mediates the Adaptation to Chronic Physiological Stress. Genes Cancer. 2013; 4(3–4):125–34.
Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P. Protein Function. Mol Biol Cell 4th Ed. 2002.
Sunshine H, Iruela-Arispe ML. Membrane Lipids and Cell Signaling. Curr Opin Lipidol. 2017; 28(5):408–13.
Dassault Systèmes BIOVIA. Discovery studio modeling environment, Version 4.5. San Diego: Dassault Systèmes; 2015.
Pantaleão SQ, Fernandes PO, Gonçalves JE, Maltarollo VG, Honorio KM. Recent Advances in the Prediction of Pharmacokinetics Properties in Drug Design Studies: A Review. ChemMedChem. 2022; 17(1):e202100542.
Mansoor A, Mahabadi N. Volume of Distribution. In: StatPearls. Treasure Island (FL): StatPearls Publishing; 2023.
Rahim F, Putra P, Ismed F, et al. Molecular Dynamics, Docking and Prediction of Absorption, Distribution, Metabolism and Excretion of Lycopene as Protein Inhibitor of Bcl2 and DNMT1. Trop J Nat Prod Res 2023; 7(7): 3439–3444.
Stalinska J, Vittori C, Ingraham Iv CH, Carson SC, Plaisance-Bonstaff K, Lassak A, Faia C, Colley SB, Peruzzi F, Reiss K, Jursic BS. Anti-glioblastoma effects of phenolic variants of benzoylphenoxyacetamide (BPA) with high
potential for blood brain barrier penetration. Sci Rep. 2022; 12(1):3384.
Kuehne A, Floerl S, Hagos Y. Investigations with Drugs and Pesticides Revealed New Species- and Substrate-Dependent Inhibition by Elacridar and Imazalil in Human and Mouse Organic Cation Transporter OCT2. Int J Mol Sci. 2022; 23(24):15795.
Zeiger E. The test that changed the world: The Ames test and the regulation of chemicals. Mutat Res Genet Toxicol Environ Mutagen. 2019; 841:43–8.
Koo JW, Russo SJ, Ferguson D, Nestler EJ, Duman RS. Nuclear factor-κB is a critical mediator of stress-impaired neurogenesis and depressive behavior. Proc Natl Acad Sci U S A. 2010; 107(6):2669–74.
Liu YZ, Wang YX, Jiang CL. Inflammation: The Common Pathway of Stress-Related Diseases. Front Hum Neurosci. 2017; 11:316.
Chen L, Deng H, Cui H, Fang J, Zuo Z, Deng J, Li Y, Wang X, Zhao L. Inflammatory responses and inflammationassociated diseases in organs.Oncotarget. 2017; 9(6):7204–18.
Stone WL, Basit H, Burns B. Pathology, Inflammation. In: StatPearls. Treasure Island (FL): StatPearls Publishing 2023.
Fang C, Xu H, Yuan L, Zhu Z, Wang X, Liu Y, Zhang A, Shao A, Lou M. Natural Compounds for SIRT1-Mediated Oxidative Stress and Neuroinflammation in Stroke: A
Potential Therapeutic Target in the Future. Oxid Med Cell Longev. 2022; 2022:e1949718.
Suzuki T, Takahashi J, Yamamoto M. Molecular Basis of the KEAP1-NRF2 Signaling Pathway. Mol Cells. 2023 Mar 31;46(3):133–41.
Salminen A, Kaarniranta K, Kauppinen A. Crosstalk between Oxidative Stress and SIRT1: Impact on the Aging Process. Int J Mol Sci. 2013; 14(2): 3834–59.
Xu JJ, Cui J, Lin Q, Chen XY, Zhang J, Gao EH, Wei B, Zhao W. Protection of the enhanced Nrf2 deacetylation and its downstream transcriptional activity by SIRT1 in myocardial ischemia/reperfusion injury. Int J Cardiol. 2021; 342(21):82–93.
Wang Q, Yang Z, Zhuang J, Zhang J, Shen F, Yu P, Zhong H, Feng F. Antiaging function of Chinese pond turtle (Chinemys reevesii) peptide through activation of the Nrf2/Keap1 signaling pathway and its structure-activity relationship. Front Nutr. 2022; 9:961922.
Prasetyawan S, Safitri A, Atho’illah MF, Rahayu S. Computational evaluation of bioactive compounds in Curcuma zanthorrhiza targeting SIRT1 and NFκB.
BioTechnologia. 2023; 104(2):171–82.
Horie Y, Suzuki T, Inoue J, Iso T, Wells G, Moore TW, Mizushima T, Dinkova-Kostova AT, Kasai T, Kamei T, Koshiba S, Yamamoto M. Molecular basis for the disruption of Keap1–Nrf2 interaction via Hinge & Latch mechanism. Commun Biol. 2021; 4(1):1–11.
Padmanabhan B, Tong KI, Ohta T, Nakamura Y, Scharlock M, Ohtsuji M, Kang MI, Kobayashi A, Yokoyama S, Yamamoto M. Structural Basis for Defects of Keap1 Activity Provoked by Its Point Mutations in Lung Cancer. Mol Cell. 2006; 21(5):689–700.
Gęgotek A, Ambrożewicz E, Jastrząb A, Jarocka-Karpowicz I, Skrzydlewska E. Rutin and ascorbic acid cooperation in antioxidant and antiapoptotic effect on human skin keratinocytes and fibroblasts exposed to UVA and UVB radiation. Arch Dermatol Res. 2019; 311(3):203–19.
Ji LL, Sheng YC, Zheng ZY, Shi L, Wang ZT. The involvement of p62–Keap1–Nrf2 antioxidative signaling pathway and JNK in the protection of natural flavonoid quercetin against hepatotoxicity. Free Radic Biol Med. 2015; 85(8):12–23.